evaluation.biocoder.run_infer

initialize_runtime

def initialize_runtime(runtime: Runtime, instance: BiocoderData)

Initialize the runtime for the agent.

This function is called before the runtime is used to run the agent.

complete_runtime

def complete_runtime(runtime: Runtime, instance: pd.Series) -> dict[str, Any]

Complete the runtime for the agent.

This function is called before the runtime is used to run the agent. If you need to do something in the sandbox to get the correctness metric after the agent has run, modify this function.